Simualte gene expression data based on parameters — ParaExpr • sCCIgen

Simualte gene expression data based on parameters

Usage

ParaExpr(
  para,
  cell_loc_list,
  expr,
  region,
  seed_list,
  model_params = NULL,
  ncores = 1
)

Arguments

para: Parameters loaded and cleaned from the parameter file using function ParaDigest.
cell_loc_list: Simulated cell location data
expr: Expression data
region: Region of cell type
seed_list: Seeds for all simulated data
model_params: The fitted models of genes.
ncores: No. of cores for simulation
CopulaEst: Estimated Gaussian Copula function for gene-gene correlation. Default=NULL.

Value

Simulated gene expression data for each cell.