Changelog

Source: NEWS.md

sCCIgen 1.0

Changes

• Functions that require reading values from the parameter file were adapted to read the configuration .yml file.

Bug fixes

• fix error when reading cell-cell interaction file in shiny.

Enhancements

• Simulation takes now into account the cell-cell communication.

New

• df_to_config() converts a data.frame parameter file into a .yml configuration file.
• sCCIgen_to_Giotto() converts the default sCCIgen output to a Giotto object.
• sCCIgen_to_Seurat() converts the default sCCIgen output to a Seurat object.
• sCCIgen_to_SpatialExperiment() converts the default sCCIgen output to a SpatialExperiment object.

sCCIgen 0.99

First public version of sCCIgen simulator.