SpatialTable

SpatialTable

Usage

SpatialTable(
  gobject,
  top_num = 2,
  fdr_cut = 0.05,
  output_file = file.path(getwd(), "est_region_specific_genes.csv")
)

Arguments

gobject

Giotto object.

top_num

Keep top K number of genes for each cell type

fdr_cut

Keep genes whose FDR is less than this cutoff.

output_file

output_file