Generate cell location data by using existing SRT data directly. — cell.loc.existing.fc • sCCIgen

Generate cell location data by using existing SRT data directly.

Usage

cell.loc.existing.fc(
  PointLoc,
  PointAnno,
  PointRegion,
  window_method = "rectangle"
)

Arguments

PointLoc: The location of input cells on x, y axis.
PointAnno: The cell type annotation of input cells.
PointRegion: The spatial regions of input cells.
window_method: Method for estimating window of cells. Choices include "network", "convex", "convex2", "convex3", convex5", "rectangle". Default is "network", which is most accurate.

Value

Simulated cell spatial map file, which is the same as the reference spatial data.