Convert sCCIgen output to a Giotto object — sCCIgen_to_Giotto • sCCIgen

Convert sCCIgen output to a Giotto object

Usage

sCCIgen_to_Giotto(counts_file, metadata_file)

Arguments

counts_file: path to .tsv file with gene x cell counts matrix.
metadata_file: path to .tsv file with metadata. The file should contain the following columns: Cell, annotation, x.loc, y.loc, and region.

Value

a Giotto object

Examples

if (FALSE) { # \dontrun{
giotto_object <- sCCIgen_to_Giotto("counts_file.tsv", "metadata_file.tsv")
} # }